PASTE THE SEQUENCE TO BE BLASTED IN TEXT FORMAT OR FOR MULTIPLE SEQUENCES IN FASTA FORMAT

To run a simple search with default parameters, click "Submit" after pasting in your sequence data. Advanced query parameters may be specified below.

DATABASE (-d)   
   songbird.clean.nasongbird.unique.nasongbird.raw.na
   

   PROGRAM TO USE (-p)    
   
         blastn
         blastx
         blastp
         tblastn
         tblastx
   

 MATRIX CHOICE (-M):     
         BLOSUM62
         BLOSUM45
         BLOSUM80
         PAM30
         PAM70
         PHAT_T85_B82.bla.txt
         PHAT_T75_B73.bla.txt
         PHAT_T80_B78.bla.txt
         PHAT_T70_B66.bla.txt
         ALIGNMENT VIEW (-m)  
        0 - Pairwise
         1 - Query-anchored showing identities
         2 - Query-anchored, no identities
         3 - Flat query-anchored, show identities
         4 - Flag query-anchored, no identities
         5 - Query-anchored, no identities, and blunt ends
         6 - Flat query-anchored, no identities, and blunt ends
         7 - XML Blast output
         8 - Tabular
    

(Multiple items may be chosen)
PERFORM GAPPED ALIGNMENTS (-g)
FILTER LOW COMPLEXITY (-F)
SHOW GI'S IN DEFLINES (-I)

**DEBUG: Show complete program string and variables ***