U of I ESTIMA Songbird Start
GO Browser Sequence ID Gene Association Search by Blast Annotations Contig Viewer

 PASTE THE SEQUENCE TO BE BLASTED IN TEXT FORMAT OR FOR MULTIPLE SEQUENCES IN FASTA FORMAT

To run a simple search with default parameters, click "Submit" after pasting in your sequence data. Advanced query parameters may be specified below.


 
DATABASE (-d)   
   
   PROGRAM TO USE (-p)    
   
Note: Songbird3 needs a project note.
COST TO EXTEND GAP (-E): COST TO OPEN GAP (-G):
DB GENETIC CODE (-D): DESCRIPTIONS (-v):
EFFECTIVE DB LENGTH (-z): EXPECTATION VALUE (-e):
NO OF ALIGNMENTS (-b): PENALTY (-q):
NO. OF PROCESSORS (-a): QUERY GENETIC CODE (-Q):
REWARD (-r): THRESHOLD (-f):
WORD SIZE (-W): X DROPOFF VALUE (-X):

 MATRIX CHOICE (-M):          ALIGNMENT VIEW (-m)  

(Multiple items may be chosen)
PERFORM GAPPED ALIGNMENTS (-g)
FILTER LOW COMPLEXITY (-F)
SHOW GI'S IN DEFLINES (-I)

**DEBUG: Show complete program string and variables ***




Problems? Questions? Contact Dr. Jyothi Thimmapuram.